What's the best inventory management software that integrates with Shopify and a 3PL?

Expert answer · sourced from 8 podcast episodes

Short answer

Instead of searching for a 3PL first, start with your inventory management software. On the Amazon Legends Podcast, Marshall Taplits advises finding software with strong Shopify integration, then choosing a 3PL from its pre-built integration list. This guarantees your systems talk to each other from day one.

TL;DR

A great story on this comes from Marshall Taplits on the Amazon Legends Podcast. He talked about a common mistake brands make when they outgrow their garage and start looking for a fulfillment partner. The typical founder goes straight to Google and searches for a 3PL. Instead, Marshall's advice is to flip the entire process on its head. The real starting point isn't the 3PL at all, it's your inventory management system (IMS).

He walks through this scenario with his clients. You're scaling your Shopify store, and you know you need help with fulfillment. The first question isn't "Which 3PL is best?" but "What is my single source of truth for inventory?" You need a system that can sit in the middle, see your Shopify sales, and communicate inventory levels accurately. So your first task is to choose that central software. Once you've picked an IMS that works for your business and integrates tightly with Shopify, you then open up its settings and look for its list of 3PL integrations. That list is your shortlist. Those are the only 3PLs you should be vetting.

By starting with the software, you solve the biggest potential problem from day one: the data connection. As Thomas Kircheis explained on Ecommerce Coffee Break, warehouse chaos almost always comes down to bad data and a lack of stock accuracy. A 3PL can have the world's best pickers and packers, but if its system can't talk to your Shopify store in real-time, you will oversell products and create a terrible customer experience. Marshall's point is that a pre-built, plug-and-play integration between an IMS and a 3PL is far more reliable than trying to build a custom connection after you've already signed a contract with a warehouse.

This is why asking for the "best software that integrates with a 3PL" is a slightly backward question. The better question is "what's the best software for my business that THEN integrates with a great 3PL?" Hosts across different shows, like Kunle Campbell on 2X eCommerce Podcast, keep coming back to the idea that seamless, real-time data flow is the foundation of scalable operations. It's not just about warehousing, it's about information management.

A contrasting example to this IMS-first approach is something Adam Shaffer mentioned on Ecommerce Coffee Break. Some brands use Amazon's Multi-Channel Fulfillment (MCF) network as their 3PL. In this model, you send your inventory to Amazon, and they fulfill both your Amazon orders and your Shopify orders. The "software" is essentially the Amazon ecosystem. This can be incredibly convenient because you have one pool of inventory and you get to take advantage of Amazon's powerful logistics and shipping rates. For a brand that already does significant volume on Amazon, it's a very different, but also viable, way to solve the same problem. The choice comes down to whether you want to build your own independent, best-in-class tech stack or go all-in with a single powerful partner.

Cited episodes (8)

  1. Amazon Legends Podcast — How to Pick A Good 3PL – A MUST For Amazon Sellers - Marshall Taplits - Amazon Legends - Episode # 161 cover art

    How to Pick A Good 3PL – A MUST For Amazon Sellers - Marshall Taplits - Amazon Legends - Episode # 161

    #1 · Amazon Legends Podcast · with Marshall Taplits

    This episode provides the core counterintuitive advice: pick your inventory software *before* you pick your 3PL partner.

  2. 2X eCommerce Podcast — Turning Operations into a Profit Center → Kunle Campbell cover art

    Turning Operations into a Profit Center → Kunle Campbell

    #2 · 2X eCommerce Podcast · with Kunle Campbell

    A great overview of why real-time inventory visibility is crucial for scaling and preventing stockouts.

  3. The My Wife Quit Her Job Podcast — 350: How To Outsource Inventory Management To A 3PL With Aaron Rubin cover art

    350: How To Outsource Inventory Management To A 3PL With Aaron Rubin

    #3 · The My Wife Quit Her Job Podcast · with Aaron Rubin

    A 3PL founder explains the technology and software integrations you should expect when outsourcing your fulfillment.

  4. The Seller's Edge — Deliverr & 3PL: Skyrocket Your Amazon & Ecommerce Business Through Third Party Fulfillment cover art
  5. eCommerce Fastlane — Drive Significant Incremental Revenue By Expanding Your Product Mix With Sina Djafari Of Duoplane cover art
  6. Firing The Man — Finding a Third Party Logistics Company (3PL) for Amazon Fulfillment cover art
  7. Ecommerce Coffee Break — What Brands Get Wrong About Warehouse Scaling — Thomas Kircheis | Why Warehouse Chaos Impact Sales, Why Stock Accuracy Is Key To Scaling Your Shopify Store, Why A Warehouse Management System Is Essential (#420) cover art
  8. Ecommerce Coffee Break — Double the Sales, Double the Success: Multichannel Mastery on Shopify and Amazon | #267 Adam Shaffer cover art

    Double the Sales, Double the Success: Multichannel Mastery on Shopify and Amazon | #267 Adam Shaffer

    #8 · Ecommerce Coffee Break · with Adam Shaffer

    This episode offers a different strategy, using Amazon's fulfillment network as a 3PL for Shopify stores.

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